DESCRIPTION OF LAB RESEARCH WORK
- MD simulation method and data analysis method development.
- Peptide, protein folding, unfolding study, specially aimed at folding, misfolding mechanism which could lead to amyloid fibril.
- DNA dynamics, DNA –protein, DNA-counterions interaction study.
- RNA dynamics and folding study.
- Close collaborations with several experimental groups to explore the underlying mechanism on the molecular, atomic level.
- Machine learning based drug discovery.
- Understanding off-target effects of CRISPR/Cas9 using molecular dynamics simulations” Mar. 2018- Feb 2021
- Apply deep learning methods to predict protein-ligand binding affinity.
Full list of publications can be found here
- Liu, Yang; Li, Weifeng; Chan-Park, Mary B.; Mu, Yuguang
The Necessity of D-Thr in the New Antibiotic Teixobactin: A Molecular Dynamics Study JOURNAL OF CHEMICAL INFORMATION AND MODELING, Volume: 59 Issue: 4 Pages: 1575-1583, 2019.
- Awuni, Elvis; Mu, Yuguang
Effect of A22 on the Conformation of Bacterial Actin MreB INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, Volume: 20 Issue: 6 Article Number: 1304, 2019.
- Zheng, Liangzhen; Xia, Kelin; Mu, Yuguang
Ligand Binding Induces Agonistic-Like Conformational Adaptations in Helix 12 of Progesterone Receptor Ligand Binding Domain, FRONTIERS IN CHEMISTRY, Volume: 7, Article Number: 315 (2019)
- Li, Qing; Li, Xuesong; Ning, Lulu; Tan, Choon-Hong; Mu, Yuguang; Wang, Rong
Hyperfast Water Transport through Biomimetic Nanochannels from Peptide-Attached (pR)-pillararene SMALL, Volume: 15 Issue: 6, Article Number: 1804678, 2019.
- Zheng, Liangzhen; Shi, Jiahai; Mu, Yuguang*
Dynamics changes of CRISPR-Cas9 systems induced by high fidelity mutations PHYSICAL CHEMISTRY CHEMICAL PHYSICS, Volume: 20 Issue: 43 Pages: 27439-27448, 2018.
- Liu, Yang; Li, Weifeng; Mu, Yuguang*
Optimization of replica exchange temperature ladder under the well-tempered ensemble CHEMICAL PHYSICS LETTERS, Volume: 711 Pages: 66-72, 2018.
- Ning, Lulu; Mu, Yuguang*
Aggregation of PrP106-126 on surfaces of neutral and negatively charged membranes studied by molecular dynamics simulations, BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, Volume: 1860 Issue: 9 Pages: 1936-1948, 2018.
- Miao, Yansong; Tipakornsaowapak, Teepiyanut; Zheng, Liangzhen; Mu, Yuguang; Lewellyn, Eric
Phospho-regulation of intrinsically disordered proteins for actin assembly and endocytosis FEBS JOURNAL, Volume: 285 Issue: 15 Pages: 2762-2784, 2018.
- Sun, He; Qiao, Zhu; Chua, Khi Pin; Tursic, Alma; Liu, Xu; Gao, Yong-Gui; Mu, Yuguang; Hou, Xingliang; Miao, Yansong,
Profilin Negatively Regulates Formin-Mediated Actin Assembly to Modulate PAMP-Triggered Plant Immunity CURRENT BIOLOGY,Volume: 28 Issue: 12 Pages: 1882-+, 2018.
- Alhossary, Amr; Awuni, Yaw; Kwoh, Chee Keong; Mu, Yuguang*,
Proposing drug fragments for dengue virus NS5 protein JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, Volume: 16 Issue: 3, 2018