Micro-crystal Electron Diffraction Workshop

Dr. Xu Hongyi from Stockholm University will be conducting a workshop to demonstrate Micro-crystal electron diffraction (MicroED) techniques. The workshop will consist of a seminar by Dr. Xu and a practical session where tips on data collection and data processing will be shared. This workshop is hosted by NISB.

The workshop will be held on the 17th July, at NTU. As seats are limited, only selected participants will be notified. The registration period is between 6th July 2023 to 13th July 2023. For enquiries, drop us an E-mail.

Thank you for your interest. Registration period is over.

 

 

Register here

 

 

About the Speaker

Dr Xu Hongyi

Hongyi Xu
Stockholm University

After completing a Bachelor of Engineering (Mechatronics) degree at the University of Queensland, Hongyi went on to pursue a PhD degree in materials engineering, specialized in electron microscopy and semiconductor nano-materials. The Australian Government sponsored his PhD study through the Australian Postgraduate Award program. He obtained his PhD degree at UQ in Dec 2013, and received the Dean’s accommodation for academic excellence as well as the best thesis of the year award from the School of Mechanical and Mining Engineering. In Feb. 2014, Hongyi started his postdoc fellowship (Wenner-Gren Foundation postdoc award) in Prof. Xiaodong Zou’s group at Stockholm University. In 2015, he initiated the development of MicroED (3D electron diffraction technique for studying biomolecules) at Zou’s group. Hongyi became a principle investigator in 2018 to further develop and apply electron crystallography methods for studying structures of small molecules and macromolecules. He received a starting grant from the Swedish Research Council. Recently, Hongyi and colleagues solved the first new protein structure using MicroED. They also shown that it is possible to reveal protein inhibitor binding by MicroED. He is now working as a researcher/principle investigator at Stockholm University.

Seminar Abstract

Structure Determination by Electron Crystallography
From Materials to Macromolecules

Hongyi Xu
Stockholm University

X-Ray Diffraction (XRD) has been an indispensable tool in structural chemistry, structural biology and material science. Despite the evolution in laboratory X-ray and synchrotron sources that have occurred in the last decade, a significant roadblock in the determination of molecular structures is the ability to grow crystals of sufficient size and quality which can be time-consuming, complicated, requires a large amount of purified molecules, or even unfeasible for many biological macromolecules and pharmaceutical compounds. Three-Dimensional electron diffraction (3D ED), also known as Micro-crystal electron diffraction (MicroED), is an emerging and game-changing technique with the potential to overcome these challenges as it allows structure determination of crystals 1 billionth the size of those used for SCXRD.

Since 2007, 3D ED has allowed structure determination of landmark samples, mostly inorganic, that were considered impracticable for X-ray methods. Researchers from several labs have developed different experimental set-ups for data acquisitions, for example automated diffraction tomography (ADT) and rotation electron diffraction (RED, Stockholm University). In 2013, Gonen’s lab successfully developed the MicroED technique for the determination of macromolecular crystal structures. However, 3D ED/MicroED is still in its infancy. Further development is required in order to unleash the full potential of 3D ED/MicroED applications in materials science, structural chemistry and structural biology.

In this talk, I would like to present our latest development in specimen preparation, data collection and processing protocol, examples of crystal structure determination by MicroED, ongoing method developments and future perspective of 3D ED/MicroED and new electron crystallography methods.

Image depicting MicroED workflow in a seminar by Dr. Xu Hongyi

Workshop Program

TimeEventLocation
9:30 AMSeminar
Structure Determination by Electron Crystallography - From materials to macromolecules
Dr Xu Honyi, Stockholm University
School of Biological Science,
Class Room 2
(Show Location)
10:30 AMPractical: MicroED Sample Preparation School of Biological Sciences,
Cryo-electron Microscope Laboratory
(Show Location)
12:00 PMLunch
Lunch is not provided
 
1:00 PMPractical: MicroED Data AnalysisFacility for Analysis, Characterisation, Testing and Simulation (FACTS)
(Show Location)
3:00 PMCoffee Break 
3:30 PMPractical: MicroED Data CollectionFacility for Analysis, Characterisation, Testing and Simulation (FACTS)
(Show Location)


For hands-on session, participants should bring along their laptops, with the following software installed:

  1. RED processing(REDp) (LINK)
  2. XDS (LINK)
  3. Shelx package (LINK)
  4. Shelx GUI (LINK)
  5. VESTA (LINK)

For more information on processing softwares used in microED, please download this document (LINK).

Location and Date

 Address

School of Biological Sciences, Cryo-electron Microscopy Laboratory
Nanyang Technological University
SBS-02n-04, 60 Nanyang Drive
Singapore 637551
Show Location

Facility for Analysis, Characterisation, Testing and Simulation (FACTS)
Nanyang Technological University
61 Nanyang Drive​​
Singapore 637335
Show Location

 Date
17th July

Contact

Dr. Boo Zhao Zhi
Tel: +65 6908 2219
Email: [email protected]
NTU Institute of Structural Biology 

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